Returns metadata of available data from Bioc OSN and scverse spatialdata- sandbox S3 buckets
Examples
SD.data_list()
#> [1] "MouseIntestineVisHD" "MouseBrainVisHD"
#> [3] "MouseBrainVis" "LungAdenocarcinomaMCMICRO"
#> [5] "MouseBrainMERFISH" "MouseLiverMERFISH"
#> [7] "ColorectalCarcinomaMIBITOF" "MulticancerSteinbock"
#> [9] "JanesickBreastVisiumEnh" "JanesickBreastXeniumRep1"
#> [11] "JanesickBreastXeniumRep2" "HumanLungMulti_10x"
#> [13] "SpaceMHelaniH3T3"
SD.data_list(metadata = TRUE)
#> Name Technology
#> 1 MouseIntestineVisHD Visium HD
#> 2 MouseIntestineVisHD Visium HD
#> 3 MouseBrainVisHD Visium HD
#> 4 MouseBrainVis Visium
#> 5 LungAdenocarcinomaMCMICRO CyCIF (MCMICRO output)
#> 6 MouseBrainMERFISH MERFISH
#> 7 MouseBrainMERFISH MERFISH
#> 8 MouseLiverMERFISH MERFISH
#> 9 ColorectalCarcinomaMIBITOF MIBI-TOF
#> 10 ColorectalCarcinomaMIBITOF MIBI-TOF
#> 11 MulticancerSteinbock IMC (Steinbock output)
#> 12 JanesickBreastVisiumEnh Visium
#> 13 JanesickBreastVisiumEnh Visium
#> 14 JanesickBreastXeniumRep1 Xenium
#> 15 JanesickBreastXeniumRep1 Xenium
#> 16 JanesickBreastXeniumRep2 Xenium
#> 17 HumanLungMulti_10x Xenium
#> 18 HumanLungMulti_10x Xenium
#> 19 SpaceMHelaniH3T3 SpaceM
#> Sample Table (Nfeat,Nobs)
#> 1 Mouse intestine (19059,5479660)
#> 2 Mouse intestine (19059,5479660)
#> 3 Mouse brain (33696,84031)
#> 4 Mouse brain (31053,6484)
#> 5 Human small lung adenocarcinoma (12,11607)
#> 6 Mouse brain (268,2389)
#> 7 Mouse brain (268,2389)
#> 8 Mouse liver (99,3375)
#> 9 Human colorectal carcinoma (36,3309)
#> 10 Human colorectal carcinoma (36,3309)
#> 11 4 different cancers (SCCHN, BCC, NSCLC, CRC) (40,47859)
#> 12 Human breast cancer (18085,4992)
#> 13 Human breast cancer (18085,4992)
#> 14 Human breast cancer (313,167780)
#> 15 Human breast cancer (313,167780)
#> 16 Human breast cancer (313,118752)
#> 17 Human lung Cancer (377,162254)
#> 18 Human lung Cancer (377,162254)
#> 19 Hepa and NIH3T3 cells (327,14425)
#> Image (dim) Nmolecules File Size S3 buckets Zarr Format
#> 1 (3,21943,23618) NA 1 GB sandbox v3
#> 2 (3,21943,23618) NA 1 GB biocOSN v2
#> 3 (3,5492,6000) NA 174 MB sandbox v3
#> 4 (3,2000,1969) NA 65 MB sandbox v3
#> 5 (12,3139,2511) NA 250 MB biocOSN v2
#> 6 (1,522,575) 3714642 50 MB sandbox v3
#> 7 (1,522,575) 3714642 50 MB biocOSN v2
#> 8 (1,6432,6432) 1153548 66 MB sandbox v3
#> 9 (3,1024,1024) NA 25 MB sandbox v3
#> 10 (3,1024,1024) NA 25 MB biocOSN v2
#> 11 (40,600,600) NA 820 MB biocOSN v2
#> 12 (3,21571,19505) NA 1.5 GB sandbox v3
#> 13 (3,21571,19505) NA 1.5 GB biocOSN v2
#> 14 (1,25778,35416) 42638083 2.8 GB sandbox v3
#> 15 (1,25778,35416) 42638083 2.8 GB biocOSN v2
#> 16 (1,25779,35411) 31997227 3.7 GB biocOSN v2
#> 17 (5,17098,51187) 12165021 5.4 GB sandbox v3
#> 18 (5,17098,51187) 12165021 5.4 GB biocOSN v2
#> 19 (2,2675,2675) NA 49 MB sandbox v3
#> License Pattern
#> 1 CCA visium_hd_3.0.0
#> 2 CCA visium_hd_3.0.0
#> 3 CC BY 4.0 DEED visium_hd_4.0.1
#> 4 CC BY 4.0 DEED visium_spatialdata
#> 5 CC BY-NC 4.0 DEED mcmicro_io
#> 6 CC0 1.0 DEED merfish
#> 7 CC0 1.0 DEED merfish
#> 8 CC BY 4.0 DEED mouse_liver
#> 9 CC BY 4.0 DEED mibitof
#> 10 CC BY 4.0 DEED mibitof
#> 11 CC BY 4.0 DEED steinbock_io
#> 12 CCA visium_associated_xenium_io
#> 13 CCA visium_associated_xenium_io
#> 14 CCA xenium_rep1_io
#> 15 CCA xenium_rep1_io
#> 16 CCA xenium_rep2_io
#> 17 CC BY 4.0 DEED xenium_2.0.0
#> 18 CC BY 4.0 DEED HuLungXenmulti
#> 19 CC BY 4.0 DEED spacem_helanih3t3