Software

• CATALYST Bioc
  Preprocessing of and differential discovery in cytometry data.
  Crowell HL, Zanotelli VRT, Chevrier S, Robinson MD (2017).

• muscat Bioc
  Multi-sample multi-group scRNA-seq data analysis tools.
  Crowell HL, Germain P-L, Soneson C, Sonrel A,
  Gilis J, Risso D, Clemend L, Robinson MD (2019).

• SpatialExperiment Bioc
  S4 Class for Spatially Resolved Transcriptomics Data.
  Righelli D, Risso D, Crowell HL, Weber LM (2020).

• SPOTlight Bioc
  Spatial transcriptomics deconvolution using a seeded NMF approach.
  Elosua-Bayes M, Crowell HL