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Plot a SpatialData object

Source: R/plotSpatialData.R
plotSpatialData.Rd

Initialize an empty ggplot for a SpatialData object. This function is typically combined with one or more calls to add specific plot layers.

Usage

plotSpatialData(x = NULL, ct = NULL)

Arguments

x

A SpatialData object.

ct

The name of a coordinate transformation to use for the plot.

Value

A ggplot object.

Examples

x <- file.path("extdata", "blobs.zarr")
x <- system.file(x, package="spatialdataR")
x <- readSpatialData(x, tables=FALSE)
ms <- lapply(seq(3), \(.) plotSpatialData(x) + plotImage(i=2, k=.))
patchwork::wrap_plots(ms)